PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012123
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 244aa    MW: 26642.9 Da    PI: 5.0254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012123genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-183685255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ GVr+++ +grWvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  Cla012123 36 KFVGVRQRP-SGRWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 85
               799******.7*********33....36**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-283692IPR001471AP2/ERF domain
SMARTSM003801.3E-353699IPR001471AP2/ERF domain
PROSITE profilePS5103219.7573693IPR001471AP2/ERF domain
PfamPF008472.8E-133685IPR001471AP2/ERF domain
CDDcd000187.43E-323692No hitNo description
SuperFamilySSF541711.9E-193693IPR016177DNA-binding domain
PRINTSPR003677.7E-83748IPR001471AP2/ERF domain
PRINTSPR003677.7E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEIDFQSPET HGGAAASVIK TSKFKGRNRG NNNGNKFVGV RQRPSGRWVA EIKDTTKKIR  60
MWLGTFETAE EAARAYDEAA CLLRGSNTRT NFIPQISTNS PIASRIRTLL NTKKTLNRKP  120
LENPTITTTT SAATAASAVA DPTIQDDGLF DGAYKPDMTN CLEEREISSC ESSCSDSCGL  180
GVSLAENTAA NSEELELCAF ERMKVERQIS ASLYAINGVQ EYMEAVHEAS EAIWDLPPLC  240
SLFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143492362ATERF1
3gcc_A1e-143492362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149126.11e-141PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0A0L1B81e-121A0A0A0L1B8_CUCSA; Uncharacterized protein
STRINGVIT_08s0007g07250.t011e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-22related to AP2 11